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Linkage Disequilibrium (LD) Decay Options

Use this to specify options for linkage disequilibrium (LD) decay analysis.


This specifies which items of output are to be produced by the analysis.

Progress Produces monitoring output detailing the progress of the analysis

Maximum distance between markers

Provides a space to specify the maximum distance to use between markers for LD to be calculated.


This specifies whether plots are to be produced by the analysis.

Plot decay Plots the probability values for the deviance ratios, on a -log10 scale, against the marker distance.
LD matrix Produces a shade plot of the LD matrix.

Action buttons

OK Stores the option settings and closes the dialog.
Cancel Close the dialog without making any changes.
Defaults Sets the options to their default settings.

Action Icons

Clear Clear all fields and list boxes.
Help Open the Help topic for this dialog.

See also

Updated on April 24, 2019

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