Compatibility Check Options

Use this to specify options for a compatibility check of QTL data.

Display

This specifies which items of output are to be produced by the analysis.

Summary	A summary of the changes
Details	Displays details of the replaced structures

Percentage of missing values allowed for genotypes

This specifies a threshold on the percentage of missing values within each genotype. Genotypes with more than that percentage of missing marker scores are excluded. The genotypes that are excluded will also be excluded from the corresponding values in other structures such as the traits, the genotypes factor, the kinship matrix and the subpopulations factor when specified on the main menu.

Percentage of missing values allowed for in markers

This specifies a threshold on the percentage of missing values allowed within each marker. Markers with more than that percentage of missing scores will be excluded.

Extreme allele percentage allowed for marker

This specifies that markers will be excluded if one allele percentage of that marker is less than the this value.

Update QTL data space with new structures

When selected the new structures will be updated or added to the QTL data space.

Action buttons

OK	Stores the option settings and closes the dialog.
Cancel	Close the dialog without making any changes.
Defaults	Sets the options to their default settings.

Action Icons

	Clear	Clear all fields and list boxes.
	Help	Open the Help topic for this dialog.